Basic Information
Locus ID:
Cgl04G2441
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 30893564 | 30899413 | - | Cgl04G2441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 35,747.35 Da | 49.21 | 57.62 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 66 | 147 | 3.2E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 249 | 307 | 3.8E-24 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 201 | 244 | 2.0E-7 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 138 | 195 | 3.01E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 61 | 137 | 5.75E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 250 | 1.77E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 265 | 2.8E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 273 | 311 | 1.9E-18 | - |
| SMART | SM00184 | ring_2 | 202 | 244 | 4.8E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 137 | 201 | 34.44981 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 59 | 135 | 25.234947 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 202 | 245 | 11.840146 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_042988981.1 | probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Carya illinoinensis] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R9H1 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_013223 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology