Basic Information
Locus ID:
Cgl04G2203
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 28463719 | 28474513 | - | Cgl04G2203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 16,617.10 Da | 31.23 | 101.37 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 108 | 143 | 6.9E-8 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 108 | 143 | 1.48E-10 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 91 | 145 | 1.2E-9 | IPR016135 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 68 | 146 | 12.522193 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53300.3 | ubiquitin-conjugating enzyme 10. Encodes a ubiquitin conjugating enzyme. | 0 |
| RefSeq | XP_011018974.1 | PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform X1 [Populus euphratica] | 0 |
| Q8S920 | Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S0TG02 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A065968 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2203 |
| Poaceae | Echinochloa crus-galli | 1 | AH08.913 |
| Poaceae | Triticum aestivum | 1 | TraesCS3A02G487000.1 |