Basic Information
Locus ID:
Cgl04G2016
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 26723154 | 26732858 | - | Cgl04G2016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 143,647.47 Da | 51.33 | 80.45 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 29 | 163 | 1.27443E-23 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1151 | 1194 | 2.22508E-21 | - |
| CDD | cd12108 | Hr-like | 610 | 755 | 1.3853E-18 | - |
| Pfam | PF14599 | Zinc-ribbon | 1199 | 1256 | 1.7E-22 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 1023 | 1098 | 7.5E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1150 | 1193 | 1.9E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 32 | 165 | 8.4E-9 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1014 | 1079 | 1.31E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1089 | 1144 | 3.14E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1144 | 1198 | 2.76E-8 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 289 | 438 | 1.5E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1145 | 1196 | 4.6E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1223 | 1258 | 6.1E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 603 | 779 | 1.5E-14 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 24 | 183 | 1.8E-23 | - |
| SMART | SM00184 | ring_2 | 1152 | 1193 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1088 | 1151 | 27.759777 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1152 | 1194 | 11.751628 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1016 | 1085 | 23.541559 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 947 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_040989292.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RNU8 | Zinc finger protein BRUTUS-like At1g18910 OS=Carpinus fangiana OX=176857 GN=FH972_019016 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology