Basic Information
Locus ID:
Cgl04G1920
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 25917981 | 25926099 | + | Cgl04G1920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 148,937.72 Da | 40.23 | 95.95 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 1296 | 1338 | 9.10881E-18 | - |
| Pfam | PF12854 | PPR repeat | 300 | 328 | 2.4E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 230 | 279 | 5.4E-15 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 912 | 938 | 1.5E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 962 | 989 | 0.19 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 883 | 909 | 0.11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 999 | 1024 | 0.016 | IPR002885 |
| Pfam | PF13639 | Ring finger domain | 1295 | 1338 | 9.4E-11 | IPR001841 |
| Pfam | PF13041 | PPR repeat family | 558 | 604 | 3.9E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 806 | 854 | 2.5E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 335 | 384 | 1.3E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 160 | 209 | 5.6E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 406 | 454 | 1.3E-17 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 476 | 524 | 4.1E-19 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 208 | 509 | 1.12E-9 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 781 | 1081 | 8.18E-5 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1283 | 1344 | 1.34E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1258 | 1343 | 9.8E-20 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 708 | 872 | 3.7E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 541 | 676 | 1.5E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 422 | 538 | 3.2E-38 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 317 | 421 | 2.7E-33 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 230 | 316 | 6.6E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 45 | 223 | 3.1E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 873 | 1105 | 2.3E-37 | IPR011990 |
| SMART | SM00184 | ring_2 | 1296 | 1337 | 1.2E-5 | IPR001841 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 198 | 232 | 2.2E-11 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 809 | 842 | 2.0E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 164 | 197 | 9.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 303 | 336 | 3.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 408 | 442 | 1.3E-11 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 514 | 537 | 4.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 912 | 939 | 2.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 478 | 512 | 3.2E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 443 | 476 | 4.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 339 | 369 | 1.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 561 | 595 | 1.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 373 | 406 | 1.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 268 | 297 | 5.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 233 | 266 | 2.1E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 371 | 405 | 12.342482 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 336 | 370 | 11.169622 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 266 | 300 | 11.980759 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 909 | 943 | 9.624079 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 406 | 440 | 13.789372 | IPR002885 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1296 | 1338 | 12.061441 | IPR001841 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 807 | 841 | 12.287675 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 476 | 510 | 14.18398 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 161 | 195 | 10.731171 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 231 | 265 | 11.99172 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 196 | 230 | 14.578587 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 559 | 593 | 10.259834 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 301 | 335 | 11.443655 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 441 | 475 | 11.673842 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74400.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_030941254.1 | putative pentatricopeptide repeat-containing protein At1g74400 [Quercus lobata] | 0 |
| Q9CA73 | Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7N2MN03 | RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13806 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000813 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114330 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004662 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54733, Sgl60034 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021740 |
| Apiaceae | Apium graveolens | 1 | Ag4G00372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G002100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714846 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G10467 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g047950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1743 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1920 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2665, evm.TU.LG14.1799 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11930 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632922 |
| Solanaceae | Solanum chilense | 1 | SOLCI000669400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10188 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09680.v3.1 |