Basic Information
Locus ID:
Cgl04G1878
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 25481855 | 25483684 | - | Cgl04G1878 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 68,501.06 Da | 38.00 | 86.57 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 15 | 129 | 1.8863E-25 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 40 | 126 | 2.1E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 323 | 381 | 8.1E-11 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 3 | 320 | 1.8E-90 | IPR007012 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 171 | 320 | 2.46E-61 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 3 | 167 | 1.24E-40 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 323 | 448 | 4.9E-31 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 8 | 164 | 2.3E-141 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 4 | 317 | 2.3E-141 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 323 | 437 | 2.5E-23 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 565 | 6.5E-194 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 529 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_023899769.1 | nuclear poly(A) polymerase 1-like [Quercus suber] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RTE1 | Poly(A) polymerase OS=Carpinus fangiana OX=176857 GN=FH972_019119 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology