Basic Information
Locus ID:
Cgl04G1385
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 17549444 | 17562713 | + | Cgl04G1385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 137,359.19 Da | 46.42 | 81.39 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 230 | 558 | 4.40566E-168 | - |
| CDD | cd00121 | MATH | 53 | 213 | 2.04824E-33 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 232 | 553 | 1.2E-45 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 657 | 909 | 9.1E-74 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 920 | 1137 | 6.0E-54 | IPR029346 |
| Pfam | PF00917 | MATH domain | 59 | 214 | 8.5E-15 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 227 | 584 | 7.26E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 218 | 3.92E-34 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 717 | 834 | 3.4E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 835 | 933 | 1.8E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 228 | 6.2E-44 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 229 | 557 | 4.8E-89 | - |
| SMART | SM00061 | math_3 | 54 | 193 | 8.3E-6 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 232 | 556 | 39.488136 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 212 | 30.184061 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 233 | 248 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 472 | 489 | - | IPR018200 |
| Coils | Coil | Coil | 572 | 592 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_050244517.1 | ubiquitin C-terminal hydrolase 12 isoform X2 [Quercus robur] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8J4VMV0 | ubiquitinyl hydrolase 1 OS=Castanea mollissima OX=60419 GN=CMV_019408 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology