Basic Information
Locus ID:
Cgl04G1262
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 15719519 | 15723019 | + | Cgl04G1262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 99,823.03 Da | 40.37 | 79.48 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 168 | 8.13388E-26 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 19 | 359 | 1.7E-93 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 362 | 420 | 1.2E-9 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 80 | 167 | 1.8E-9 | IPR002934 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 362 | 487 | 1.02E-31 | IPR011068 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 676 | 735 | 7.59E-8 | IPR029052 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 17 | 206 | 7.48E-45 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 210 | 359 | 2.41E-59 | - |
| SUPERFAMILY | SSF64484 | beta and beta-prime subunits of DNA dependent RNA-polymerase | 776 | 880 | 1.4E-6 | - |
| Gene3D | G3DSA:3.60.21.10 | - | 644 | 743 | 6.2E-8 | IPR029052 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 362 | 476 | 5.8E-23 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 19 | 353 | 1.9E-146 | - |
| Gene3D | G3DSA:1.10.274.100 | RNA polymerase Rpb1, domain 3 | 744 | 889 | 1.2E-11 | IPR042102 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 203 | 1.9E-146 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 594 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_023899769.1 | nuclear poly(A) polymerase 1-like [Quercus suber] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RTE1 | Poly(A) polymerase OS=Carpinus fangiana OX=176857 GN=FH972_019119 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology