Basic Information
Locus ID:
Cgl04G1257
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 15686033 | 15690064 | + | Cgl04G1257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 102,281.51 Da | 41.13 | 81.50 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 169 | 7.5599E-27 | - |
| Pfam | PF04983 | RNA polymerase Rpb1, domain 3 | 682 | 816 | 6.9E-8 | IPR007066 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 19 | 360 | 1.2E-93 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 80 | 168 | 4.0E-10 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 421 | 1.2E-9 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 17 | 207 | 9.09E-46 | IPR043519 |
| SUPERFAMILY | SSF64484 | beta and beta-prime subunits of DNA dependent RNA-polymerase | 680 | 818 | 3.2E-13 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 363 | 488 | 1.26E-30 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 360 | 6.28E-59 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 477 | 1.5E-22 | - |
| Gene3D | G3DSA:1.10.274.100 | RNA polymerase Rpb1, domain 3 | 664 | 827 | 1.3E-25 | IPR042102 |
| Gene3D | G3DSA:1.10.1410.10 | - | 19 | 354 | 8.9E-146 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 8.9E-146 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_023899769.1 | nuclear poly(A) polymerase 1-like [Quercus suber] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RTE1 | Poly(A) polymerase OS=Carpinus fangiana OX=176857 GN=FH972_019119 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology