Basic Information
Locus ID:
Cgl04G1171
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 14727170 | 14732208 | - | Cgl04G1171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 50,858.51 Da | 38.44 | 80.76 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 359 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 320 | 7.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 234 | 452 | 1.83E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 149 | 459 | 5.4E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 238 | 275 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 407 | 76.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 360 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 320 | 1.1E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 369 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 359 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 329 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 10.915394 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 347 | 361 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 307 | 321 | 3.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_050280479.1 | zinc finger CCCH domain-containing protein 48-like [Quercus robur] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6Q9V7 | Zinc finger CCCH domain-containing protein 48 OS=Carpinus fangiana OX=176857 GN=FH972_000707 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology