halophFGD

Basic Information

Locus ID: Cgl04G1158

Species & Taxonomic ID: Casuarina glauca & 3522

Genome Assembly: GCA_028551395.1

Description: Topless-related protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	14390953	14393433	+	Cgl04G1158

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.92	36,551.74 Da	39.20	86.35	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF101908	Putative isomerase YbhE	38	184	5.36E-9	-
Gene3D	G3DSA:2.130.10.10	-	25	242	6.2E-9	IPR015943

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15880.3	WUS-interacting protein 2.
RefSeq	XP_042973431.1	topless-related protein 4-like isoform X4 [Carya illinoinensis]
Swiss-Prot	Q10NY2	Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1
TrEMBL	A0A6A1UGU8	Topless-related protein 4 OS=Morella rubra OX=262757 GN=CJ030_MR0G024269 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg13488, jg18249, jg18268, jg24027, jg25438, jg25460, jg4697 ... jg26543, jg29961, jg36984
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10386, gene_10619, gene_21401, gene_21419
Amaranthaceae	Atriplex hortensis	3	Ah005700, Ah010441, Ah014307
Amaranthaceae	Beta vulgaris	3	BVRB_4g076250, BVRB_8g193940, BVRB_9g219140
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11625, Sbi_jg17198, Sbi_jg25644, Sbi_jg46779 ... Sbi_jg46781, Sbi_jg61805, Sbi_jg9465
Amaranthaceae	Salicornia europaea	4	Seu_jg19151, Seu_jg20872, Seu_jg20874, Seu_jg460
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005133, GOSA_00010992, GOSA_00015387
Amaranthaceae	Suaeda glauca	8	Sgl24430, Sgl29605, Sgl41993, Sgl46768, Sgl56356, Sgl56388 ... Sgl61886, Sgl61919
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011286, gene:ENSEOMG00000019274 ... gene:ENSEOMG00000038854, gene:ENSEOMG00000043305, gene:ENSEOMG00000048108, gene:ENSEOMG00000050136
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0007660, CQ.Regalona.r1.4BG0007850 ... CQ.Regalona.r1.7BG0009300, CQ.Regalona.r1.8AG0022300, CQ.Regalona.r1.8BG0020140, CQ.Regalona.r1.9AG0015260
Anacardiaceae	Pistacia vera	7	pistato.v30081820, pistato.v30099130, pistato.v30129150 ... pistato.v30233880, pistato.v30250460, pistato.v30250470, pistato.v30254890
Apiaceae	Apium graveolens	8	Ag10G01889, Ag4G01641, Ag5G00157, Ag6G00855, Ag7G00556 ... Ag7G01576, Ag9G01174, Ag9G01188
Arecaceae	Cocos nucifera	10	COCNU_01G017940, COCNU_07G002990, COCNU_08G005510 ... COCNU_09G000290, COCNU_10G002010, COCNU_11G000720, COCNU_11G008070, COCNU_16G001730, COCNU_16G003850, scaffold007249G000010
Arecaceae	Phoenix dactylifera	11	gene-LOC103698154, gene-LOC103706469, gene-LOC103706477 ... gene-LOC103706497, gene-LOC103707931, gene-LOC103711465, gene-LOC103711491, gene-LOC103713030, gene-LOC103715883, gene-LOC103717021, gene-LOC120105697
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.106.V1.1, AsparagusV1_01.1131.V1.1 ... AsparagusV1_03.3122.V1.1, AsparagusV1_05.132.V1.1, AsparagusV1_05.3276.V1.1, AsparagusV1_08.115.V1.1
Asteraceae	Flaveria trinervia	9	Ftri15G09924, Ftri16G18463, Ftri18G22231, Ftri18G22477 ... Ftri1G19714, Ftri7G31324, Ftri8G02263, Ftri9G26698, FtriNA18121
Brassicaceae	Arabidopsis thaliana	5	AT1G15750.1, AT1G80490.2, AT3G15880.2, AT3G16830.1 ... AT5G27030.2
Brassicaceae	Eutrema salsugineum	7	Thhalv10003550m.g.v1.0, Thhalv10006622m.g.v1.0 ... Thhalv10012501m.g.v1.0, Thhalv10018037m.g.v1.0, Thhalv10019939m.g.v1.0, Thhalv10019944m.g.v1.0, Thhalv10024263m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g14040.v2.2, Sp2g21040.v2.2, Sp3g14210.v2.2 ... Sp3g15070.v2.2, Sp5g35310.v2.2, Sp6g34310.v2.2, Sp7g14550.v2.2
Brassicaceae	Brassica nigra	11	BniB01g047880.2N, BniB02g078890.2N, BniB03g026420.2N ... BniB04g004650.2N, BniB05g027650.2N, BniB06g041080.2N, BniB06g051460.2N, BniB07g028530.2N, BniB07g053080.2N, BniB07g053910.2N, BniB08g003920.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq02G0325, Ceq02G0352, Ceq04G2380, Ceq04G2381, Ceq06G0596 ... Ceq06G1142, Ceq09G1934
Casuarinaceae	Casuarina glauca	8	Cgl02G0367, Cgl04G1158, Cgl04G1159, Cgl04G2584, Cgl04G2585 ... Cgl06G0616, Cgl06G1190, Cgl09G2115
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno02g11470, gene.Cymno03g03690, gene.Cymno13g01790 ... gene.Cymno17g05000, gene.Cymno18g05380
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g18130, gene.Thate02g06650, gene.Thate09g04540
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-5457, nbisL1-mrna-704, nbisL1-mrna-8146 ... nbisL1-mrna-8253
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.769, evm.TU.LG03.1795, evm.TU.LG03.2505 ... evm.TU.LG07.933, evm.TU.LG11.1250
Plantaginaceae	Plantago ovata	6	Pov_00003814, Pov_00007215, Pov_00007333, Pov_00020197 ... Pov_00035267, Pov_00039245
Plumbaginaceae	Limonium bicolor	6	Lb1G03842, Lb1G06589, Lb1G06617, Lb3G18283, Lb4G21947 ... Lb6G31728
Poaceae	Echinochloa crus-galli	9	AH01.4312, AH02.990, AH08.405, BH01.4618, BH02.1138 ... BH08.415, CH01.4928, CH02.1162, CH08.490
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0005320, gene-QOZ80_1BG0053950 ... gene-QOZ80_3AG0241470, gene-QOZ80_3BG0286640, gene-QOZ80_8AG0618460, gene-QOZ80_8BG0645950
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0253400.1, HORVU.MOREX.r3.4HG0391150.1 ... HORVU.MOREX.r3.7HG0695720.1
Poaceae	Lolium multiflorum	4	gene-QYE76_048005, gene-QYE76_052118, gene-QYE76_069212 ... gene-QYE76_069222
Poaceae	Oryza coarctata	6	Oco01G006840, Oco02G007160, Oco05G008470, Oco06G008770 ... Oco15G002700, Oco16G002720
Poaceae	Oryza sativa	3	LOC_Os01g15020.1, LOC_Os03g14980.1, LOC_Os08g06480.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G414900, gene-BS78_03G104900 ... gene-BS78_07G054000, gene-BS78_07G054100
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102076, Pt_Chr0102097, Pt_Chr0604056, Pt_Chr0605327
Poaceae	Sporobolus alterniflorus	12	Chr01G029820, Chr02G026100, Chr03G002050, Chr04G000280 ... Chr05G003850, Chr07G000330, Chr08G003020, Chr12G009710, Chr16G001690, Chr17G001590, Chr20G011500, Chr29G011110
Poaceae	Thinopyrum elongatum	3	Tel3E01G303700, Tel4E01G384600, Tel7E01G511700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG024050, gene_TRIDC3BG027960 ... gene_TRIDC4AG011380, gene_TRIDC4BG039040, gene_TRIDC7AG041110, gene_TRIDC7BG031090
Poaceae	Triticum aestivum	9	TraesCS3A02G173300.1, TraesCS3B02G204200.3 ... TraesCS3D02G179800.3, TraesCS4A02G083300.2, TraesCS4B02G220900.3, TraesCS4D02G221200.1, TraesCS7A02G296100.6, TraesCS7B02G189300.1, TraesCS7D02G293500.1
Poaceae	Zea mays	5	Zm00001eb011010_P001, Zm00001eb127680_P004 ... Zm00001eb333590_P001, Zm00001eb398420_P001, Zm00001eb415530_P001
Poaceae	Zoysia japonica	3	nbis-gene-2224, nbis-gene-32424, nbis-gene-7274
Poaceae	Zoysia macrostachya	5	Zma_g1618, Zma_g22518, Zma_g4003, Zma_g7413, Zma_g9745
Portulacaceae	Portulaca oleracea	8	evm.TU.LG06.1280, evm.TU.LG07.1780, evm.TU.LG07.1797 ... evm.TU.LG11.625, evm.TU.LG15.1375, evm.TU.LG15.1394, evm.TU.LG18.1282, evm.TU.LG20.604
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g04070, gene.Posoc07g01330, gene.Posoc10g04060
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.58, evm.TU.Scaffold_11_RagTag.657 ... evm.TU.Scaffold_18_RagTag.335, evm.TU.Scaffold_1_RagTag.86, evm.TU.Scaffold_2_RagTag.2082, evm.TU.Scaffold_4_RagTag.2293
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-12874, nbisL1-mrna-25148, nbisL1-mrna-28170 ... nbisL1-mrna-2895, nbisL1-mrna-7275, nbisL1-mrna-8190
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-11286, nbisL1-mrna-14193, nbisL1-mrna-17193 ... nbisL1-mrna-21312, nbisL1-mrna-3308, nbisL1-mrna-5161
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12280, nbisL1-mrna-13665, nbisL1-mrna-16498 ... nbisL1-mrna-5038, nbisL1-mrna-5172
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000005l.36, evm.TU.utg000008l.1347 ... evm.TU.utg000009l.41, evm.TU.utg000023l.228, evm.TU.utg000033l.39
Rhizophoraceae	Kandelia obovata	6	Maker00000014, Maker00005668, Maker00008522, Maker00011416 ... Maker00014662, Maker00019026
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12997, nbisL1-mrna-16734, nbisL1-mrna-1837 ... nbisL1-mrna-987
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-14461, nbisL1-mrna-16135, nbisL1-mrna-22211 ... nbisL1-mrna-77, nbisL1-mrna-8336
Salicaceae	Populus euphratica	11	populus_peu02633, populus_peu04730, populus_peu04731 ... populus_peu05742, populus_peu11115, populus_peu12945, populus_peu12946, populus_peu13327, populus_peu15646, populus_peu16212, populus_peu33477
Solanaceae	Lycium barbarum	6	gene-LOC132603150, gene-LOC132633000, gene-LOC132633066 ... gene-LOC132635387, gene-LOC132636158, gene-LOC132646001
Solanaceae	Solanum chilense	5	SOLCI000856800, SOLCI002474200, SOLCI005587800 ... SOLCI006336000, SOLCI007513400
Solanaceae	Solanum pennellii	6	gene-LOC107004473, gene-LOC107013633, gene-LOC107014300 ... gene-LOC107026193, gene-LOC107027199, gene-LOC107028481
Tamaricaceae	Reaumuria soongarica	4	STRG.12160_chr02_-, gene_10945, gene_10958, gene_17174
Tamaricaceae	Tamarix chinensis	3	TC02G0882, TC08G2273, TC10G1281
Zosteraceae	Zostera marina	4	Zosma02g02590.v3.1, Zosma02g16750.v3.1, Zosma03g23160.v3.1 ... Zosma05g21200.v3.1