Basic Information
Locus ID:
Cgl04G1119
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
U3 small nucleolar RNA-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 13847703 | 13875782 | - | Cgl04G1119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 123,590.21 Da | 51.41 | 74.03 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 844 | 1086 | 1.44681E-73 | - |
| Pfam | PF06862 | Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 | 291 | 452 | 4.8E-40 | IPR010678 |
| Pfam | PF00400 | WD domain, G-beta repeat | 967 | 1001 | 1.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 879 | 917 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1049 | 1086 | 4.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 843 | 876 | 5.4E-4 | IPR001680 |
| Pfam | PF08799 | pre-mRNA processing factor 4 (PRP4) like | 708 | 734 | 2.8E-11 | IPR014906 |
| Pfam | PF00400 | WD domain, G-beta repeat | 928 | 959 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF158230 | PRP4-like | 686 | 741 | 1.31E-14 | IPR036285 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 844 | 1085 | 3.05E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1028 | 1097 | 9.5E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 830 | 1027 | 4.3E-62 | IPR015943 |
| Gene3D | G3DSA:4.10.280.110 | - | 679 | 747 | 1.0E-13 | IPR036285 |
| SMART | SM00320 | WD40_4 | 1047 | 1086 | 3.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 876 | 2.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1004 | 1044 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 962 | 1001 | 4.1E-11 | IPR001680 |
| SMART | SM00500 | pr04_2 | 703 | 756 | 4.1E-16 | IPR014906 |
| SMART | SM00320 | WD40_4 | 878 | 917 | 5.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 920 | 959 | 3.7E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 885 | 922 | 10.811958 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1054 | 1086 | 11.101955 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 927 | 964 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 927 | 968 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1054 | 1095 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 844 | 878 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1011 | 1053 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 885 | 926 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 969 | 1010 | 17.125254 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 969 | 1003 | 13.263763 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 844 | 878 | 13.248743 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 904 | 918 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 946 | 960 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 988 | 1002 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 988 | 1002 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 863 | 877 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 904 | 918 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 671 | - | - |
| Coils | Coil | Coil | 739 | 770 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17690.1 | 0 | |
| RefSeq | XP_023926548.1 | U3 small nucleolar RNA-associated protein 25-like [Quercus suber] | 0 |
| Q8H1E7 | Protein NUCLEOLAR FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=NOF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RGV2 | SET domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_016755 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4616 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022013 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59422, Sbi_jg63224 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23667 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020750 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02801, Sgl07928 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015868, gene:ENSEOMG00000031830 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0021940, CQ.Regalona.r1.3BG0022730 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30185870, pistato.v30185920 |
| Apiaceae | Apium graveolens | 1 | Ag3G00776 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008580, COCNU_04G008590 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697000 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1547.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G20849 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G05720.1, AT2G41500.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000860m.g.v1.0, Thhalv10016457m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23770.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g004030.2N, BniB06g000680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0988 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1119 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g04910 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0142s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g01260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2511 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024221 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09059, Lb2G09065, Lb3G21066, Lb4G23346 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3617, BH01.3965, CH01.4233 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0248450, gene-QOZ80_3BG0279810 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0127160.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003868, gene-QYE76_067869 |
| Poaceae | Oryza coarctata | 2 | Oco05G013690, Oco06G012690 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g23935.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G352500 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G034800, Chr04G011460, Chr07G010890, Chr12G004840 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G344100, Tel4E01G250400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG022360, gene_TRIDC2BG025830 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G175200.1, TraesCS2B02G201600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb017050_P005, Zm00001eb344450_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3317 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3655 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.432, evm.TU.LG15.511 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g21700, gene.Posoc07g10130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1126 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6486 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16593 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21088 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.830 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016797 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11016 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13329 |
| Salicaceae | Populus euphratica | 2 | populus_peu10900, populus_peu26220 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132612576, gene-LOC132613932 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017856 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5107 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2514 |
| Zosteraceae | Zostera marina | 1 | Zosma05g18040.v3.1 |