Basic Information
Locus ID:
Cgl04G1117
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 13837555 | 13842504 | + | Cgl04G1117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 50,793.54 Da | 35.81 | 76.78 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 356 | 5.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 190 | 5.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 317 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 151 | 449 | 7.94E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 301 | 456 | 1.3E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 144 | 300 | 1.6E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 271 | 317 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 357 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 404 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 190 | 2.9E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 199 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 10.755779 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 304 | 326 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 158 | 190 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 327 | 366 | 10.34136 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 177 | 191 | 7.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 7.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 344 | 358 | 7.4E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 121 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_050279460.1 | zinc finger CCCH domain-containing protein 48-like isoform X2 [Quercus robur] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RDY1 | Zinc finger CCCH domain-containing protein 48-like OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology