Basic Information
Locus ID:
Cgl04G0972
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 11899456 | 11918057 | - | Cgl04G0972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 144,894.95 Da | 39.74 | 88.15 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 171 | 1.65898E-25 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 941 | 1274 | 8.9E-15 | IPR001394 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 80 | 164 | 8.2E-9 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 360 | 3.7E-97 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 421 | 5.4E-10 | IPR007010 |
| Pfam | PF06337 | DUSP domain | 695 | 743 | 3.7E-8 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 703 | 743 | 3.79E-9 | IPR035927 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 207 | 1.31E-46 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 363 | 487 | 1.2E-30 | IPR011068 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 925 | 1275 | 5.49E-27 | IPR038765 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 360 | 4.19E-61 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 757 | 843 | 1.9E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1084 | 1285 | 1.6E-22 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 355 | 4.2E-148 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 656 | 756 | 2.7E-14 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 4.2E-148 | IPR043519 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 889 | 1035 | 3.1E-5 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 477 | 7.6E-23 | - |
| SMART | SM00695 | dusp | 675 | 746 | 6.7E-4 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 834 | 1289 | 10.276509 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 1252 | 1269 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 589 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_042972497.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Carya illinoinensis] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RW56 | Ubiquitin carboxyl-terminal hydrolase OS=Carpinus fangiana OX=176857 GN=FH972_019968 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology