Basic Information
Locus ID:
Cgl04G0967
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 11837542 | 11840654 | - | Cgl04G0967 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 75,368.65 Da | 39.58 | 81.74 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 169 | 3.04386E-26 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 421 | 2.8E-10 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 80 | 167 | 2.7E-9 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 360 | 6.9E-97 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 207 | 2.37E-46 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 363 | 486 | 6.87E-32 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 360 | 2.88E-61 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 2.9E-148 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 355 | 2.9E-148 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 476 | 3.0E-24 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 5 | 607 | 7.6E-202 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 587 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_023899769.1 | nuclear poly(A) polymerase 1-like [Quercus suber] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RTE1 | Poly(A) polymerase OS=Carpinus fangiana OX=176857 GN=FH972_019119 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology