Basic Information
Locus ID:
Cgl04G0948
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 11628457 | 11631422 | + | Cgl04G0948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 41,337.42 Da | 69.26 | 55.35 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 244 | 285 | 1.44604E-24 | - |
| Pfam | PF13639 | Ring finger domain | 243 | 285 | 3.3E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 65 | 96 | 2.4E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 291 | 4.2E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 291 | 5.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 42 | 88 | 19.0 | IPR001841 |
| SMART | SM00184 | ring_2 | 244 | 284 | 7.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 285 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 326 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_041027756.1 | probable E3 ubiquitin-protein ligase RHC1A [Juglans microcarpa x Juglans regia] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RW35 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_019949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology