Basic Information
Locus ID:
Cgl04G0899
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 11099786 | 11107239 | + | Cgl04G0899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 87,710.61 Da | 47.52 | 107.21 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 3.92805E-19 | - |
| CDD | cd16664 | RING-Ubox_PUB | 390 | 433 | 4.51524E-24 | - |
| Pfam | PF04564 | U-box domain | 6 | 78 | 3.4E-18 | IPR003613 |
| Pfam | PF04564 | U-box domain | 388 | 456 | 3.0E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 478 | 756 | 2.84E-16 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 112 | 385 | 1.04E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 386 | 460 | 3.26E-25 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 80 | 2.04E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 470 | 775 | 2.7E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 3.4E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 384 | 2.7E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 387 | 460 | 1.1E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 1.4E-28 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 389 | 454 | 1.4E-34 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 385 | 461 | 31.20055 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 36.676037 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021822385.1 | E3 ubiquitin-protein ligase PUB24-like [Prunus avium] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZKW1 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_015928 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology