Basic Information
Locus ID:
Cgl04G0671
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 8687792 | 8690304 | - | Cgl04G0671 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 30,522.52 Da | 64.97 | 74.49 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 78 | 122 | 6.0E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 97 | 192 | 1.57E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 23 | 64 | 1.41E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 85 | 8.2E-6 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 263 | - | - |
| Coils | Coil | Coil | 222 | 253 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027154579.1 | uncharacterized protein LOC113754375 [Coffea eugenioides] | 0 |
| TrEMBL | A0A068UGY7 | C1_2 domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00025014001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq07G2182, Ceq07G2183, Ceq07G2184 |
| Casuarinaceae | Casuarina glauca | 8 | Cgl01G1990, Cgl04G0671, Cgl04G0734, Cgl07G2393, Cgl07G2398 ... |