Basic Information
Locus ID:
Cgl04G0160
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 2340434 | 2364647 | - | Cgl04G0160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 167,595.50 Da | 53.65 | 100.47 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 906 | 950 | 5.7E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 1168 | 1208 | 2.7E-5 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 110 | 131 | 0.22 | IPR001611 |
| Pfam | PF12937 | F-box-like | 696 | 741 | 2.1E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 484 | 526 | 2.2E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 481 | 551 | 1.57E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 904 | 961 | 5.36E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 66 | 2.62E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 90 | 689 | 6.28E-20 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1238 | 1370 | 1.63E-15 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 547 | 1118 | 8.63E-27 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 696 | 760 | 6.8E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 1165 | 1217 | 2.49E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 753 | 893 | 1.8E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 694 | 739 | 3.3E-10 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1164 | 1206 | 2.4E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 899 | 951 | 1.6E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 10 | 189 | 1.1E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 971 | 1135 | 1.7E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 249 | 477 | 1.7E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1207 | 1385 | 2.0E-18 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1395 | 1425 | 7.0E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 478 | 693 | 1.2E-28 | IPR032675 |
| SMART | SM00256 | fbox_2 | 1168 | 1209 | 0.095 | IPR001810 |
| SMART | SM00256 | fbox_2 | 17 | 58 | 10.0 | IPR001810 |
| SMART | SM00256 | fbox_2 | 698 | 739 | 1.1E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 909 | 950 | 0.18 | IPR001810 |
| SMART | SM00256 | fbox_2 | 487 | 528 | 1.6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 790 | 813 | 470.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1078 | 1102 | 60.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 136 | 160 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 227 | 530.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 110 | 135 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1252 | 1277 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 346 | 370 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1330 | 1354 | 79.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 585 | 610 | 0.25 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 611 | 635 | 65.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1355 | 1374 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1026 | 1050 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1103 | 1126 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 561 | 584 | 190.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 903 | 950 | 10.848683 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 58 | 9.391492 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1162 | 1209 | 9.735919 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 692 | 739 | 11.405066 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 481 | 528 | 9.153042 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05460.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_020876385.1 | putative F-box/LRR-repeat protein 23 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9S9V9 | Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8S2ARS8 | Genome assembly, chromosome: 6 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS16920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 7 | jg20796, jg20799, jg20800, jg20801, jg25023, jg25038 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22563, gene_23874 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah008894, Ah016403, Ah035513, Ah035515, Ah035516 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g027120, BVRB_2g027130, BVRB_8g187380 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg21812, Sbi_jg21814, Sbi_jg22000, Sbi_jg22002 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg15933, Seu_jg15935, Seu_jg2147 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018102, GOSA_00018103 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl13279, Sgl27040, Sgl45215, Sgl45233, Sgl45234, Sgl45243 ... |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000009447, gene:ENSEOMG00000016860 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.2AG0019000, CQ.Regalona.r1.2AG0019010 ... |
| Apiaceae | Apium graveolens | 7 | Ag11G04938, Ag6G01145, Ag6G01149, Ag6G01151, Ag6G01220 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705624 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.3.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G01611, Ftri14G18342, Ftri14G20505, Ftri15G03599 |
| Brassicaceae | Arabidopsis thaliana | 8 | AT4G03630.1, AT4G03635.1, AT4G05460.1, AT4G05470.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10009631m.g.v1.0, Thhalv10010638m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g06280.v2.2, Sp6g03620.v2.2, SpUn0416_0010.v2.2 ... |
| Brassicaceae | Brassica nigra | 23 | BniB01g023450.2N, BniB02g003630.2N, BniB03g002270.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq01G1362, Ceq04G0101, Ceq04G0102, Ceq04G0106, Ceq04G0107 |
| Casuarinaceae | Casuarina glauca | 8 | Cgl04G0068, Cgl04G0158, Cgl04G0159, Cgl04G0160, Cgl04G0162 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0322s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4096 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.158 |
| Plantaginaceae | Plantago ovata | 16 | Pov_00009428, Pov_00015414, Pov_00015417, Pov_00033074 ... |
| Plumbaginaceae | Limonium bicolor | 15 | Lb1G07003, Lb2G09700, Lb2G11614, Lb2G12142, Lb2G12143 ... |
| Poaceae | Echinochloa crus-galli | 43 | AH07.1564, AH07.1568, AH08.555, AH08.557, AH08.565, AH08.566 ... |
| Poaceae | Eleusine coracana subsp. coracana | 14 | gene-QOZ80_2AG0111110, gene-QOZ80_8AG0620240 ... |
| Poaceae | Hordeum vulgare | 16 | HORVU.MOREX.r3.1HG0005410.1, HORVU.MOREX.r3.2HG0103950.1 ... |
| Poaceae | Lolium multiflorum | 43 | gene-QYE76_001794, gene-QYE76_006656, gene-QYE76_009677 ... |
| Poaceae | Oryza coarctata | 8 | Oco03G008760, Oco03G008780, Oco04G009170, Oco04G009200 ... |
| Poaceae | Oryza sativa | 18 | LOC_Os02g21240.1, LOC_Os02g21260.1, LOC_Os08g09220.1 ... |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_03G060000, gene-BS78_07G074600 ... |
| Poaceae | Puccinellia tenuiflora | 24 | Pt_Chr0200734, Pt_Chr0202455, Pt_Chr0202457, Pt_Chr0202464 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G030750, Chr15G022190, Chr16G002550, Chr17G002250 |
| Poaceae | Thinopyrum elongatum | 24 | Tel1E01G071900, Tel1E01G232800, Tel2E01G038100 ... |
| Poaceae | Triticum dicoccoides | 34 | gene_TRIDC1AG003490, gene_TRIDC1AG018470 ... |
| Poaceae | Triticum aestivum | 70 | TraesCS1A02G033100.1, TraesCS1A02G128000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb354560_P001, Zm00001eb413420_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-27552, nbis-gene-38890, nbis-gene-38891 ... |
| Poaceae | Zoysia macrostachya | 7 | Zma_g12646, Zma_g15926, Zma_g22606, Zma_g22607, Zma_g22610 ... |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2666, evm.TU.LG04.1140, evm.TU.LG05.1681 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.944 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16716, nbisL1-mrna-16792 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10238 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17250 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.115 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012339 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8650 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9166 |
| Salicaceae | Populus euphratica | 1 | populus_peu17631 |
| Solanaceae | Lycium barbarum | 12 | gene-LOC132609366, gene-LOC132609371, gene-LOC132609381 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI001177800, SOLCI001691500, SOLCI006070400 ... |
| Solanaceae | Solanum pennellii | 12 | gene-LOC107014973, gene-LOC107026818, gene-LOC107027046 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18317_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1902 |
| Zosteraceae | Zostera marina | 6 | Zosma03g04230.v3.1, Zosma06g01200.v3.1, Zosma06g11830.v3.1 ... |