Basic Information
Locus ID:
Cgl04G0039
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
protein binding, zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 469033 | 474250 | - | Cgl04G0039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 127,023.10 Da | 77.09 | 57.23 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 1087 | 1127 | 2.75903E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 1085 | 1132 | 1.6E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1087 | 1133 | 1.06E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1071 | 1138 | 3.2E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1088 | 1127 | 10.969719 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 916 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1023 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1024 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 242 | - | - |
| Coils | Coil | Coil | 1036 | 1056 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20160.3 | - | 0 |
| RefSeq | XP_041023663.1 | altered inheritance of mitochondria protein 44 [Juglans microcarpa x Juglans regia] | 0 |
| A8MQ27 | E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens OX=9606 GN=NEURL1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QAV9 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001158 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22433 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6132 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg15962 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24587 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013748 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71751, Sgl71785, Sgl75319, Sgl75352 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000037628 |
| Apiaceae | Apium graveolens | 1 | Ag7G00435 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G26808, Ftri18G14861 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G30860.1, AT2G34920.1, AT5G44690.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006896m.g.v1.0, Thhalv10016344m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g26760.v2.2, Sp2g09500.v2.2, Sp4g17220.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g009380.2N, BniB01g009390.2N, BniB04g046740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0017 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0039 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3045 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.292 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038688 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25218 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31798 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.269, evm.TU.LG04.486 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1049 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13448 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5336, nbisL1-mrna-7181 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4364, nbisL1-mrna-9272 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.296, evm.TU.utg000008l.834 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000868, Maker00004249 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2218, nbisL1-mrna-3649 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7662, nbisL1-mrna-9626 |
| Salicaceae | Populus euphratica | 3 | populus_peu03842, populus_peu12404, populus_peu34678 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622313, gene-LOC132631865 |
| Solanaceae | Solanum chilense | 2 | SOLCI003805600, SOLCI007218900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002538, gene-LOC107011145 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.12198_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0624 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19250.v3.1 |