Basic Information
Locus ID:
Cgl03G2979
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 35139033 | 35144991 | - | Cgl03G2979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 49,803.57 Da | 46.85 | 63.78 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 363 | 391 | 2.3E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 325 | 352 | 1.2E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 269 | 291 | 3.5E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 358 | 392 | 1.26E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 264 | 294 | 1.46E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 316 | 350 | 1.41E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 394 | 426 | 4.97E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 355 | 392 | 8.8E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 317 | 354 | 1.6E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 259 | 295 | 2.1E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 393 | 426 | 1.4E-10 | - |
| SMART | SM00547 | zf_4 | 365 | 389 | 1.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 270 | 294 | 7.9E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 326 | 350 | 5.4E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 398 | 424 | 0.061 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 268 | 292 | 9.483959 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 324 | 353 | 9.867894 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 363 | 392 | 10.951945 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 396 | 425 | 9.698511 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 367 | 386 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 272 | 291 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 400 | 419 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_042964039.1 | zinc finger protein VAR3, chloroplastic [Carya illinoinensis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6RUB5 | Zinc finger protein VAR3, chloroplastic OS=Carpinus fangiana OX=176857 GN=FH972_019654 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology