Basic Information
Locus ID:
Cgl03G2946
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 34831220 | 34832419 | + | Cgl03G2946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 44,598.14 Da | 47.42 | 103.38 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 1 | 34 | 2.27477E-16 | - |
| Pfam | PF04564 | U-box domain | 1 | 59 | 5.0E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 64 | 3.96E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 106 | 361 | 5.4E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 78 | 393 | 1.2E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 61 | 1.8E-19 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 54 | 7.9E-16 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 61 | 28.608761 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_040996590.1 | U-box domain-containing protein 21-like [Juglans microcarpa x Juglans regia] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4DHI8 | RING-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC108980211 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology