Basic Information
Locus ID:
Cgl03G2598
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 31307593 | 31323652 | - | Cgl03G2598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 118,611.67 Da | 47.40 | 73.71 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 386 | 519 | 7.17746E-17 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 524 | 648 | 1.0E-57 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 650 | 708 | 7.8E-12 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 712 | 782 | 6.0E-6 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 367 | 523 | 1.4E-22 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 649 | 775 | 1.08E-37 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 524 | 648 | 1.18E-49 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 367 | 518 | 8.99E-33 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 365 | 377 | 7.2E-16 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 524 | 646 | 2.6E-59 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 514 | 523 | 1.0E-33 | - |
| Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 157 | 332 | 1.9E-5 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 650 | 765 | 3.3E-30 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 378 | 431 | 7.2E-16 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 433 | 513 | 1.0E-33 | IPR043519 |
| SMART | SM00702 | p4hc | 152 | 331 | 7.9E-35 | IPR006620 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 233 | 332 | 11.349981 | IPR005123 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 833 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1008 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_040996645.1 | nuclear poly(A) polymerase 1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498I0X8 | polynucleotide adenylyltransferase OS=Malus domestica OX=3750 GN=DVH24_023540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology