Basic Information
Locus ID:
Cgl03G2571
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 31077810 | 31087276 | + | Cgl03G2571 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 59,739.17 Da | 64.51 | 83.47 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 353 | 528 | 1.02114E-107 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 351 | 457 | 6.3E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 13 | 104 | 5.4E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 353 | 484 | 2.09E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 339 | 528 | 4.9E-70 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 7 | 129 | 1.0E-28 | - |
| SMART | SM00232 | pad1_6 | 353 | 481 | 2.3E-18 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 354 | 484 | 31.641823 | IPR037518 |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_042961925.1 | AMSH-like ubiquitin thioesterase 1 [Carya illinoinensis] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RTB8 | MPN domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019752 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology