Basic Information
Locus ID:
Cgl03G2200
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 27173156 | 27180443 | - | Cgl03G2200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 53,448.42 Da | 55.21 | 78.60 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 109 | 5.39365E-24 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 226 | 275 | 4.87825E-29 | - |
| Pfam | PF09280 | XPC-binding domain | 334 | 389 | 9.3E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 57 | 111 | 3.8E-11 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 235 | 270 | 2.1E-13 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 54 | 114 | 7.14E-14 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 229 | 281 | 2.44E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 330 | 396 | 1.44E-21 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 115 | 2.2E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 412 | 501 | 5.7E-10 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 225 | 275 | 2.8E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 325 | 389 | 1.4E-26 | IPR036353 |
| SMART | SM00727 | CBM | 332 | 375 | 4.4E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 232 | 272 | 1.8E-4 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 110 | 1.3E-8 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 55 | 426 | 1.1E-82 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 230 | 273 | 12.402311 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 58 | 114 | 12.96646 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 382 | 9.0E-16 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 488 | 503 | 9.0E-16 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 183 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052185932.1 | ubiquitin receptor RAD23c-like [Diospyros lotus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6RMU5 | Ubiquitin receptor RAD23 OS=Carpinus fangiana OX=176857 GN=FH972_018605 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology