Basic Information
Locus ID:
Cgl03G2177
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26974239 | 26978509 | + | Cgl03G2177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 24,679.63 Da | 53.44 | 75.33 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 42 | 92 | 9.39147E-21 | - |
| Pfam | PF00240 | Ubiquitin family | 41 | 92 | 5.7E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 38 | 106 | 1.43E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 26 | 93 | 3.0E-17 | - |
| SMART | SM00213 | ubq_7 | 25 | 94 | 5.1E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 42 | 92 | 12.35675 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 216 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_043806690.1 | ubiquitin receptor RAD23c isoform X2 [Manihot esculenta] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6RMU5 | Ubiquitin receptor RAD23 OS=Carpinus fangiana OX=176857 GN=FH972_018605 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology