Basic Information
Locus ID:
Cgl03G2147
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26635572 | 26650396 | + | Cgl03G2147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 112,689.01 Da | 49.00 | 80.09 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 855 | 964 | 2.54723E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 271 | 599 | 8.6211E-87 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 714 | 759 | 2.7E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 291 | 677 | 5.9E-68 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 857 | 955 | 2.8E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 260 | 599 | 5.32E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 607 | 1012 | 3.4E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 711 | 771 | 8.05E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 708 | 765 | 7.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 614 | 1012 | 1.0E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 243 | 330 | 6.9E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 361 | 453 | 1.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 470 | 612 | 2.8E-30 | IPR038718 |
| SMART | SM00184 | ring_2 | 715 | 755 | 3.4E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 872 | 955 | 2.3E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 267 | 576 | 1.4E-28 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 286 | 561 | 12.080933 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 847 | 1008 | 13.665869 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 715 | 751 | 11.441815 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 730 | 739 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_023878192.1 | helicase-like transcription factor CHR28 isoform X1 [Quercus suber] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RPX2 | Helicase-like transcription factor CHR28 OS=Carpinus fangiana OX=176857 GN=FH972_018678 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology