Basic Information
Locus ID:
Cgl03G2137
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26564995 | 26570479 | - | Cgl03G2137 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 64,992.65 Da | 50.88 | 97.15 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 2.65461E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 387 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 514 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 557 | 1.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 299 | 8.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 345 | 0.021 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 260 | 557 | 6.92E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 253 | 558 | 7.2E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 7.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 2.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 66.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 1.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.0028 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 309 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 559 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 559 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 102 | 152 | 9.105463 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.849261 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 10.653776 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 374 | 388 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 5.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_018836336.2 | WD repeat-containing protein 26 homolog isoform X1 [Juglans regia] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RMW3 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_018669 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology