Basic Information
Locus ID:
Cgl03G1976
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 24871922 | 24878451 | - | Cgl03G1976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 71,592.22 Da | 63.32 | 83.70 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 583 | 627 | 7.49342E-18 | - |
| Pfam | PF13639 | Ring finger domain | 582 | 627 | 4.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 582 | 632 | 1.04E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 551 | 632 | 6.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 583 | 626 | 9.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 583 | 627 | 12.69582 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019082123.1 | PREDICTED: E3 ubiquitin-protein ligase MBR1-like [Vitis vinifera] | 0 |
| Q08DI6 | RING finger protein 11 OS=Bos taurus OX=9913 GN=RNF11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1W830 | E3 ubiquitin-protein ligase RING1 OS=Morella rubra OX=262757 GN=CJ030_MR3G017061 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1411 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1976 |