Basic Information
Locus ID:
Cgl03G1923
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 24193800 | 24200735 | + | Cgl03G1923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 79,432.16 Da | 47.89 | 72.49 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 165 | 469 | 2.72978E-162 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 166 | 469 | 4.4E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 71 | 108 | 6.3E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 67 | 112 | 9.77E-13 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 162 | 483 | 1.28E-87 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 60 | 113 | 5.6E-15 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 161 | 480 | 2.1E-91 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 71 | 108 | 12.319962 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 166 | 472 | 48.614983 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 71 | 108 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 167 | 182 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 620 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_040998468.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RKN9 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Carpinus fangiana OX=176857 GN=FH972_017852 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology