Basic Information
Locus ID:
Cgl03G1770
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 22306890 | 22307603 | + | Cgl03G1770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 25,698.85 Da | 55.99 | 68.78 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 34 | 78 | 3.95251E-30 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 36 | 76 | 6.1E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 89 | 5.11E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 90 | 7.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 36 | 76 | 6.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 77 | 13.669518 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 51 | 60 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021601243.1 | E3 ubiquitin-protein ligase RNF185 [Manihot esculenta] | 0 |
| Q568Y3 | E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus OX=10116 GN=Rnf185 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RMC2 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_018447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology