Basic Information
Locus ID:
Cgl03G1280
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 16328863 | 16335777 | - | Cgl03G1280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.43 | 64,010.45 Da | 50.10 | 87.94 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 270 | 4.4E-8 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 118 | 138 | 3.6E-4 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 181 | 208 | 3.3E-5 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 52 | 104 | 7.4E-13 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 5.24E-53 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 156 | 302 | 6.4E-25 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 155 | 3.2E-34 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.01 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 4.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 0.22 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.301834 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 11.64773 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.41059 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 10.550764 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.62102 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.063051 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.701759 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.418106 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.58258 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.72461 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 416 | 425 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 6.3E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 6.3E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_030955026.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Quercus lobata] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RAI1 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_013545 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology