Basic Information
Locus ID:
Cgl03G1131
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 13399146 | 13404244 | + | Cgl03G1131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 83,618.19 Da | 38.02 | 77.02 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 164 | 419 | 5.57498E-65 | - |
| CDD | cd10316 | RGL4_M | 440 | 539 | 1.59416E-34 | IPR029413 |
| CDD | cd10317 | RGL4_C | 551 | 735 | 1.12576E-43 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 549 | 733 | 1.2E-42 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 463 | 535 | 6.3E-25 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 149 | 361 | 6.5E-91 | IPR010325 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 170 | 410 | 2.35E-5 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 483 | 538 | 5.3E-10 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 546 | 735 | 6.04E-42 | IPR008979 |
| Gene3D | G3DSA:2.60.40.1120 | - | 437 | 537 | 6.2E-9 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 547 | 735 | 2.4E-18 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 165 | 431 | 3.6E-9 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24430.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_023875540.1 | rhamnogalacturonate lyase B-like [Quercus suber] | 0 |
| TrEMBL | A0A6P9F452 | rhamnogalacturonan endolyase OS=Juglans regia OX=51240 GN=LOC109011817 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology