Basic Information
Locus ID:
Cgl03G1129
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 13344584 | 13352042 | + | Cgl03G1129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 108,207.06 Da | 41.34 | 78.22 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 629 | 728 | 2.43722E-34 | IPR029413 |
| CDD | cd10317 | RGL4_C | 740 | 928 | 1.31864E-56 | - |
| CDD | cd10320 | RGL4_N | 303 | 590 | 6.59209E-81 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 303 | 498 | 4.0E-96 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 652 | 723 | 8.4E-25 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 738 | 926 | 2.0E-56 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 309 | 590 | 3.14E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 627 | 720 | 1.14E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 735 | 928 | 1.02E-49 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 303 | 601 | 6.5E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 626 | 725 | 6.1E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 736 | 927 | 3.4E-20 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_041018456.1 | probable rhamnogalacturonate lyase B [Juglans microcarpa x Juglans regia] | 0 |
| TrEMBL | A0A8T1Q2U0 | Rhamnogalacturonan endolyase OS=Carya illinoinensis OX=32201 GN=CIPAW_07G162600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology