Basic Information
Locus ID:
Cgl03G1128
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 13330237 | 13336441 | + | Cgl03G1128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 71,414.53 Da | 33.74 | 76.95 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 425 | 612 | 4.69374E-59 | - |
| CDD | cd10316 | RGL4_M | 314 | 413 | 6.84936E-34 | IPR029413 |
| CDD | cd10320 | RGL4_N | 8 | 281 | 3.78779E-70 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 183 | 3.8E-73 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 337 | 408 | 2.2E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 423 | 611 | 5.1E-58 | IPR029411 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 313 | 411 | 1.41E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 22 | 278 | 6.91E-8 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 420 | 612 | 7.31E-52 | IPR008979 |
| Gene3D | G3DSA:2.60.40.1120 | - | 311 | 409 | 7.2E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 7 | 284 | 1.6E-12 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 421 | 612 | 6.5E-22 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_041018457.1 | probable rhamnogalacturonate lyase B [Juglans microcarpa x Juglans regia] | 0 |
| TrEMBL | A0A5N6R9P0 | rhamnogalacturonan endolyase OS=Carpinus fangiana OX=176857 GN=FH972_013820 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology