halophFGD

Basic Information

Locus ID: Cgl03G0956

Species & Taxonomic ID: Casuarina glauca & 3522

Genome Assembly: GCA_028551395.1

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr03	11290288	11297186	+	Cgl03G0956

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.55	167,196.25 Da	46.12	90.33	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	522	564	1.96511E-19	-
Pfam	PF04564	U-box domain	519	588	3.6E-14	IPR003613
Pfam	PF00400	WD domain, G-beta repeat	1225	1240	0.28	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	1249	1283	1.5E-4	IPR001680
SUPERFAMILY	SSF57850	RING/U-box	508	590	6.06E-23	-
SUPERFAMILY	SSF48371	ARM repeat	839	1160	6.14E-9	IPR016024
SUPERFAMILY	SSF50978	WD40 repeat-like	1224	1490	3.36E-31	IPR036322
Gene3D	G3DSA:2.130.10.10	-	1176	1317	3.8E-16	IPR015943
Gene3D	G3DSA:2.130.10.10	-	1318	1491	1.1E-9	IPR015943
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	500	597	1.6E-23	IPR013083
SMART	SM00504	Ubox_2	521	585	1.9E-25	IPR003613
SMART	SM00320	WD40_4	1245	1284	3.6E-7	IPR001680
SMART	SM00320	WD40_4	1202	1240	2.0	IPR001680
SMART	SM00320	WD40_4	1450	1489	0.084	IPR001680
SMART	SM00320	WD40_4	1411	1447	290.0	IPR001680
SMART	SM00320	WD40_4	1286	1325	390.0	IPR001680
ProSiteProfiles	PS51698	U-box domain profile.	517	592	35.490715	IPR003613
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1252	1283	10.970139	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1252	1283	13.215325	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1457	1491	10.475033	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1457	1491	10.126507	-
MobiDBLite	mobidb-lite	consensus disorder prediction	603	630	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	460	480	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	481	512	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	445	519	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	304	419	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	313	330	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	445	459	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	361	380	-	-
Coils	Coil	Coil	1121	1141	-	-

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_018833472.1	putative E3 ubiquitin-protein ligase LIN-1 [Juglans regia]
Swiss-Prot	C6L7U1	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2
TrEMBL	A0A5N6R8A9	RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_013958 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg11768, jg11769, jg11770, jg11771, jg31633, jg31634
Anacardiaceae	Pistacia vera	2	pistato.v30049320, pistato.v30256780
Apiaceae	Apium graveolens	3	Ag2G02459, Ag3G02527, Ag8G00225
Arecaceae	Cocos nucifera	2	COCNU_03G011900, COCNU_07G002000
Arecaceae	Phoenix dactylifera	2	gene-LOC103702597, gene-LOC103706139
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1751.V1.1, AsparagusV1_03.2268.V1.1 ... AsparagusV1_04.824.V1.1
Asteraceae	Flaveria trinervia	3	Ftri4G07535, Ftri7G18227, Ftri8G01620
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0877, Ceq06G1516
Casuarinaceae	Casuarina glauca	2	Cgl03G0956, Cgl06G1574
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-141, nbisL1-mrna-8648
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.710, evm.TU.LG07.1111
Plantaginaceae	Plantago ovata	2	Pov_00003863, Pov_00020671
Poaceae	Echinochloa crus-galli	4	AH02.91, BH01.509, BH02.80, CH02.102
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0000840, gene-QOZ80_1BG0049330
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248980.1
Poaceae	Lolium multiflorum	3	gene-QYE76_051444, gene-QYE76_051560, gene-QYE76_051566
Poaceae	Oryza coarctata	2	Oco01G005770, Oco02G005870
Poaceae	Oryza sativa	1	LOC_Os01g12930.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G006500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0204871
Poaceae	Sporobolus alterniflorus	1	Chr21G016220
Poaceae	Thinopyrum elongatum	1	Tel3E01G274000
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020830, gene_TRIDC3BG031130
Poaceae	Triticum aestivum	3	TraesCS3A02G154900.1, TraesCS3B02G181200.1 ... TraesCS3D02G162400.1
Poaceae	Zea mays	1	Zm00001eb119290_P001
Poaceae	Zoysia japonica	5	nbis-gene-24273, nbis-gene-24274, nbis-gene-32721 ... nbis-gene-32722, nbis-gene-32723
Poaceae	Zoysia macrostachya	2	Zma_g7183, Zma_g9505
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.437, evm.TU.Scaffold_4_RagTag.1931 ... evm.TU.Scaffold_7_RagTag.428
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13099, nbisL1-mrna-16388, nbisL1-mrna-25645
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12295, nbisL1-mrna-6585
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-13044, nbisL1-mrna-13045, nbisL1-mrna-16830 ... nbisL1-mrna-16831
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000018l.158, add.evm.TU.utg000033l.95 ... evm.TU.utg000002l.484, evm.TU.utg000008l.1103
Rhizophoraceae	Kandelia obovata	3	Maker00000143, Maker00011993, Maker00014879
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-20232, nbisL1-mrna-23194
Salicaceae	Populus euphratica	5	populus_peu15357, populus_peu21947, populus_peu33000 ... populus_peu33001, populus_peu33002
Solanaceae	Lycium barbarum	2	gene-LOC132603413, gene-LOC132622109
Solanaceae	Solanum pennellii	3	gene-LOC107017250, gene-LOC107025502, gene-LOC114077896