Basic Information
Locus ID:
Cgl03G0892
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 10540877 | 10543658 | + | Cgl03G0892 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 37,467.18 Da | 55.06 | 59.69 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 1.48052E-45 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 245 | 309 | 7.15059E-18 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 35 | 116 | 7.2E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 245 | 312 | 3.9E-11 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 27 | 124 | 9.55E-32 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 242 | 315 | 1.31E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 26 | 130 | 2.4E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 228 | 321 | 9.5E-18 | IPR036910 |
| SMART | SM00398 | hmgende2 | 244 | 313 | 6.2E-12 | IPR009071 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 2.5E-33 | - |
| SMART | SM00501 | bright_3 | 30 | 121 | 4.2E-33 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 25.145044 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 245 | 312 | 14.248544 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 221 | - | - |
| Coils | Coil | Coil | 301 | 321 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_042990346.1 | high mobility group B protein 9 isoform X1 [Carya illinoinensis] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B9G523 | ARID/BRIGHT DNA binding domain OS=Betula platyphylla OX=78630 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology