Basic Information
Locus ID:
Cgl03G0593
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
SOC1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 7204488 | 7212451 | + | Cgl03G0593 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 23,548.90 Da | 57.49 | 94.14 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 71 | 2.93296E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 81 | 170 | 1.0E-22 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.0E-24 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 6.67E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 1.6E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.1E-37 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 29.968723 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 14.892321 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 9.8E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 9.8E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 9.8E-29 | IPR002100 |
| Coils | Coil | Coil | 120 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.1 | AGAMOUS-like 14. AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. | 0 |
| RefSeq | XP_023876869.1 | agamous-like MADS-box protein AGL19 [Quercus suber] | 0 |
| Q38838 | Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A1VW15 | Agamous-like MADS-box protein AGL19 OS=Morella rubra OX=262757 GN=CJ030_MR4G021167 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology