Basic Information
Locus ID:
Cgl03G0479
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Copper-transporting ATPase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 5942956 | 5949058 | - | Cgl03G0479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 31,274.99 Da | 27.37 | 98.49 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00504 | Chlorophyll A-B binding protein | 15 | 63 | 2.5E-16 | IPR022796 |
| Pfam | PF00702 | haloacid dehalogenase-like hydrolase | 204 | 279 | 9.5E-9 | - |
| SUPERFAMILY | SSF81660 | Metal cation-transporting ATPase, ATP-binding domain N | 210 | 281 | 1.31E-11 | IPR023299 |
| SUPERFAMILY | SSF103511 | Chlorophyll a-b binding protein | 7 | 91 | 1.57E-24 | - |
| SUPERFAMILY | SSF81665 | Calcium ATPase, transmembrane domain M | 120 | 200 | 4.97E-5 | IPR023298 |
| Gene3D | G3DSA:3.40.1110.10 | - | 220 | 284 | 3.5E-14 | IPR023299 |
| Gene3D | G3DSA:1.10.3460.10 | Chlorophyll a/b binding protein domain | 1 | 85 | 9.6E-27 | IPR023329 |
| Gene3D | G3DSA:1.20.1110.10 | - | 86 | 219 | 2.3E-9 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63440.1 | heavy metal atpase 5. The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed. | 0 |
| RefSeq | XP_028097037.1 | probable copper-transporting ATPase HMA5 [Camellia sinensis] | 0 |
| Q9SH30 | Probable copper-transporting ATPase HMA5 OS=Arabidopsis thaliana OX=3702 GN=HMA5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4S4DCH2 | HMA domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_014672 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19216 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8642 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035892 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39861, Sbi_jg55195 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12359, Sgl17638 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017960, gene:ENSEOMG00000036011 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023110, CQ.Regalona.r1.1BG0001110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101810, pistato.v30112040 |
| Apiaceae | Apium graveolens | 3 | Ag2G02233, AgUnG00498, AgUnG01243 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G006920, COCNU_01G012850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718458, gene-LOC120112142 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2124.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11256 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023636m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03060.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g059370.2N, BniB04g020930.2N, BniB07g047370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2941, Ceq02G2954 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G3068, Cgl03G0479 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07640 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0027s00003.v1.0, Dusal.0027s00004.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.812 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008337, Pov_00008339 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30997 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2269, BH07.3989, CH06.2291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0544770, gene-QOZ80_6BG0498280 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021341 |
| Poaceae | Oryza coarctata | 2 | Oco03G004870, Oco04G005060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G189000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202120 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G007810, Chr0G005680, Chr10G017910, Chr11G004710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G331000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG028780 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G159800.1, TraesCS6B02G191500.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10052, nbis-gene-41037 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30808, Zma_g33057 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1073, evm.TU.LG22.814 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1678 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14367, nbisL1-mrna-3389 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10848, nbisL1-mrna-21435 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.905, evm.TU.utg000006l.965 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009805, Maker00013273 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13895 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15607, nbisL1-mrna-4633 |
| Salicaceae | Populus euphratica | 1 | populus_peu26841 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132629504, gene-LOC132636547 |
| Solanaceae | Solanum chilense | 2 | SOLCI000988100, SOLCI005200100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002211, gene-LOC107007169 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.22943_chr05_-, gene_2174, gene_8148 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2682 |
| Zosteraceae | Zostera marina | 1 | Zosma01g28630.v3.1 |