Basic Information
Locus ID:
Cgl03G0256
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 3009207 | 3011041 | - | Cgl03G0256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 12,156.75 Da | 35.47 | 92.04 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 30 | 102 | 7.60365E-35 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 30 | 101 | 1.3E-26 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 30 | 107 | 3.53E-32 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 26 | 108 | 2.8E-38 | IPR016135 |
| SMART | SM00212 | ubc_7 | 2 | 107 | 6.3E-20 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 107 | 27.837273 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 34 | 49 | - | IPR023313 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53300.1 | ubiquitin-conjugating enzyme 10. Encodes a ubiquitin conjugating enzyme. | 0 |
| RefSeq | XP_007137562.1 | hypothetical protein PHAVU_009G136900g [Phaseolus vulgaris] | 0 |
| P35133 | Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana OX=3702 GN=UBC10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A4PR22 | Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0066531 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag2G02313, Ag3G02413, Ag6G01684, Ag8G00600 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0211 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0256 |
| Poaceae | Echinochloa crus-galli | 3 | BH02.940, BH06.2074, Contig3144.1 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG074700, gene_TRIDC6BG021190 |