Basic Information
Locus ID:
Cgl03G0217
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 2499221 | 2500891 | - | Cgl03G0217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 58,911.79 Da | 47.04 | 65.24 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 9 | 54 | 1.1E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 448 | 488 | 8.1E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 172 | 230 | 5.4E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 383 | 431 | 1.4E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 449 | 488 | 1.64E-7 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 148 | 231 | 5.76E-10 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 32 | 122 | 1.86E-12 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 350 | 438 | 1.78E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 216 | 340 | 1.1E-8 | - |
| Gene3D | G3DSA:3.30.60.20 | - | 22 | 59 | 6.0E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 265 | 4.3E-5 | IPR013083 |
| SMART | SM00109 | c1_12 | 120 | 166 | 2.5 | IPR002219 |
| SMART | SM00109 | c1_12 | 9 | 63 | 0.048 | IPR002219 |
| SMART | SM00109 | c1_12 | 451 | 497 | 0.3 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 10 | 62 | 8.4755 | IPR002219 |
| Coils | Coil | Coil | 501 | 508 | - | - |
| Coils | Coil | Coil | 180 | 202 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11385.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_018848904.1 | uncharacterized protein LOC109011949 [Juglans regia] | 0 |
| TrEMBL | A0A2I4GYD7 | uncharacterized protein LOC109011949 OS=Juglans regia OX=51240 GN=LOC109011949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |