Basic Information
Locus ID:
Cgl03G0048
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 646382 | 666882 | + | Cgl03G0048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 190,106.38 Da | 34.89 | 99.04 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 275 | 300 | 0.28 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 143 | 170 | 6.6E-5 | IPR002885 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 579 | 618 | 3.9E-11 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 643 | 682 | 2.2E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 1152 | 1211 | 3.4E-8 | IPR001611 |
| Pfam | PF01535 | PPR repeat | 216 | 241 | 1.1E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 244 | 269 | 0.0026 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 1321 | 1559 | 5.0E-43 | IPR000719 |
| Pfam | PF13041 | PPR repeat family | 404 | 452 | 1.6E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 303 | 350 | 3.0E-7 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1298 | 1636 | 5.8E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 982 | 1237 | 1.02E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 642 | 939 | 1.02E-57 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1401 | 1649 | 5.3E-53 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 59 | 189 | 5.2E-19 | IPR011990 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 941 | 1250 | 5.5E-81 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 302 | 357 | 1.1E-5 | IPR011990 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 573 | 637 | 4.5E-10 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1283 | 1400 | 1.4E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 641 | 924 | 8.7E-77 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 360 | 460 | 7.7E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 190 | 301 | 2.3E-21 | IPR011990 |
| SMART | SM00369 | LRR_typ_2 | 781 | 805 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 709 | 733 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 829 | 852 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1174 | 1197 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1053 | 1077 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1198 | 1223 | 5.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1126 | 1150 | 40.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1319 | 1694 | 1.1E-31 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 407 | 441 | 3.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 307 | 339 | 2.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 216 | 242 | 3.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 143 | 174 | 1.1E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 211 | 245 | 9.108898 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 405 | 440 | 10.785976 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 273 | 303 | 8.571795 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 304 | 338 | 9.700809 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1319 | 1603 | 35.339958 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 141 | 175 | 9.481582 | IPR002885 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1450 | 1462 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1325 | 1348 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47460.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_023916481.1 | putative pentatricopeptide repeat-containing protein At5g47460 [Quercus suber] | 0 |
| Q9FGL1 | Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E103 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9G7R7 | PPR_long domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14077 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15510 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14888 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24165, Sbi_jg8008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12032 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010758 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52378, Sgl57669 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004423 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004580, CQ.Regalona.r1.5BG0004990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142500 |
| Apiaceae | Apium graveolens | 1 | Ag6G01715 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G30799 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G47460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000835m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064050.2N, BniB04g010200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0044 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0048 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1194 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004190 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.926, evm.TU.LG17.914 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.338 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12290 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.167 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014200 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18103 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635120 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026631 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14929 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3807 |