Basic Information
Locus ID:
Cgl03G0030
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 365814 | 381469 | - | Cgl03G0030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 82,205.26 Da | 41.13 | 87.64 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 71 | 279 | 9.45344E-130 | - |
| CDD | cd18794 | SF2_C_RecQ | 280 | 428 | 1.0041E-68 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 259 | 2.9E-20 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 623 | 681 | 2.5E-8 | IPR002121 |
| Pfam | PF09382 | RQC domain | 500 | 602 | 6.0E-5 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 449 | 494 | 7.1E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 310 | 418 | 3.4E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 128 | 434 | 1.89E-53 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 623 | 687 | 2.62E-5 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 499 | 600 | 1.7E-22 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 280 | 495 | 3.0E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 618 | 687 | 6.5E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 52 | 279 | 5.2E-90 | IPR027417 |
| SMART | SM00487 | ultradead3 | 85 | 288 | 2.8E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 338 | 419 | 2.2E-25 | IPR001650 |
| SMART | SM00956 | RQC_2 | 503 | 600 | 0.0062 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 82 | 541 | 3.9E-154 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 614 | 693 | 12.968361 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 297 | 458 | 18.431156 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | 24.379087 | IPR014001 |
| Coils | Coil | Coil | 3 | 37 | - | - |
| Coils | Coil | Coil | 692 | 712 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_035543183.1 | ATP-dependent DNA helicase Q-like 2 isoform X1 [Juglans regia] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P9EG61 | ATP-dependent DNA helicase OS=Juglans regia OX=51240 GN=LOC109003363 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology