Basic Information
Locus ID:
Cgl02G2252
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 23790834 | 23802480 | - | Cgl02G2252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 65,194.68 Da | 53.83 | 94.40 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 556 | 2.07439E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 556 | 5.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 513 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 299 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 385 | 0.0084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 344 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 556 | 1.26E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 520 | 5.8E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 568 | 6.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 6.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 0.62 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 6.0E-11 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 7.5E-4 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 9.534019 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.105098 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 302 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 348 | 11.154684 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.61889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 7.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 501 | 515 | 7.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 7.4E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_042976588.1 | WD repeat-containing protein 26 homolog isoform X2 [Carya illinoinensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1VA04 | WD repeat-containing protein 26 OS=Morella rubra OX=262757 GN=CJ030_MR6G028551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology