Basic Information
Locus ID:
Cgl02G2171
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 21562236 | 21568526 | + | Cgl02G2171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 51,648.45 Da | 46.09 | 78.74 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 157 | 211 | 1.6E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 53 | 112 | 7.6E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 234 | 1.11E-26 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 340 | 3.89E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 119 | 1.9E-14 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 355 | 1.3E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 126 | 217 | 4.1E-12 | IPR036770 |
| SMART | SM00248 | ANK_2a | 91 | 122 | 2.7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 57 | 86 | 0.16 | IPR002110 |
| SMART | SM00248 | ANK_2a | 157 | 186 | 1.4E-4 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 157 | 189 | 10.926559 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 284 | 334 | 9.686208 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 91 | 112 | 8.613973 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 157 | 185 | 10.365044 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 91 | 112 | 8.629499 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 299 | 308 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 450 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_030934375.1 | E3 ubiquitin-protein ligase XBAT33 [Quercus lobata] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N2MIP6 | RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology