Basic Information
Locus ID:
Cgl02G2131
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
MADS-box protein SOC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 20869616 | 20885498 | - | Cgl02G2131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 24,704.69 Da | 67.79 | 80.14 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 69 | 2.87925E-42 | IPR033896 |
| Pfam | PF01486 | K-box region | 85 | 170 | 5.1E-21 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.3E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 87 | 1.07E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 95 | 2.4E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 9.9E-42 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.239605 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 184 | 13.440902 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.9E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.9E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.9E-31 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 194 | - | - |
| Coils | Coil | Coil | 142 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_050251034.1 | MADS-box protein AGL42-like isoform X1 [Quercus robur] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QY54 | MADS-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_008257 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology