Basic Information
Locus ID:
Cgl02G1928
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 18580094 | 18587248 | + | Cgl02G1928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 90,066.82 Da | 56.06 | 68.40 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 490 | 619 | 7.9596E-63 | - |
| CDD | cd00201 | WW | 22 | 52 | 1.68855E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 502 | 610 | 3.7E-34 | IPR001650 |
| Pfam | PF00397 | WW domain | 21 | 51 | 2.8E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 295 | 465 | 1.0E-47 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 343 | 627 | 1.22E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.08E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 258 | 480 | 1.5E-78 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 63 | 4.4E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 481 | 651 | 4.3E-58 | IPR027417 |
| SMART | SM00456 | ww_5 | 20 | 53 | 5.9E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 290 | 493 | 1.9E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 530 | 610 | 8.6E-34 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.1126 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 505 | 649 | 25.94009 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 302 | 476 | 30.050322 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 422 | 430 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 823 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 80 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_018823062.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X1 [Juglans regia] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2I4EUH5 | DEAD-box ATP-dependent RNA helicase 14 isoform X1 OS=Juglans regia OX=51240 GN=LOC108992842 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology