Basic Information
Locus ID:
Cgl02G1880
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 18118393 | 18119596 | + | Cgl02G1880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 41,188.26 Da | 44.20 | 77.55 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 143 | 186 | 1.12601E-19 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 192 | 5.81E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 191 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 185 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 372 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018828832.1 | RING-H2 finger protein ATL46-like [Juglans regia] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QXV3 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007451 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology