Basic Information
Locus ID:
Cgl02G1853
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 17872370 | 17877558 | - | Cgl02G1853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 49,466.63 Da | 27.34 | 80.13 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 316 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 355 | 4.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 193 | 6.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 155 | 445 | 2.98E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 299 | 451 | 4.2E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 137 | 298 | 6.7E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 360 | 403 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 356 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 270 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 316 | 1.7E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 38 | 61 | 0.0028 | IPR000571 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 5.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 285 | 325 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 193 | 10.521959 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 36 | 62 | 12.267424 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 303 | 317 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 343 | 357 | 3.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030967527.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3M9 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology