Basic Information
Locus ID:
Cgl02G1601
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 14884260 | 14892477 | + | Cgl02G1601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 97,263.40 Da | 51.47 | 80.99 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 523 | 563 | 1.02332E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 473 | 507 | 2.9E-8 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 524 | 565 | 8.2E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 512 | 568 | 1.01E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 762 | 853 | 2.04E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 605 | 667 | 3.5E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 510 | 598 | 7.0E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 608 | 670 | 4.7E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 523 | 564 | 2.7E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 611 | 668 | 0.0019 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 521 | 566 | 10.4067 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 524 | 563 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 380 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_018850599.1 | uncharacterized protein LOC109013101 isoform X2 [Juglans regia] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4H398 | uncharacterized protein LOC109013101 isoform X2 OS=Juglans regia OX=51240 GN=LOC109013101 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology