Basic Information
Locus ID:
Cgl02G1477
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Enhancer of mRNA-decapping protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 13409745 | 13432743 | + | Cgl02G1477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 318,196.16 Da | 44.16 | 82.81 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01866 | Rab2 | 677 | 832 | 1.60457E-111 | - |
| Pfam | PF00071 | Ras family | 678 | 830 | 8.9E-57 | IPR001806 |
| Pfam | PF13041 | PPR repeat family | 2580 | 2628 | 1.3E-10 | IPR002885 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 232 | 496 | 6.1E-88 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 520 | 649 | 5.5E-26 | IPR008811 |
| Pfam | PF16529 | WD40 region of Ge1, enhancer of mRNA-decapping protein | 1070 | 1382 | 3.5E-19 | IPR032401 |
| Pfam | PF13041 | PPR repeat family | 2479 | 2527 | 1.8E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 2379 | 2424 | 4.6E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 2350 | 2376 | 0.12 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 2755 | 2878 | 1.1E-36 | IPR032867 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 234 | 500 | 8.43E-27 | IPR017853 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 678 | 840 | 1.13E-52 | IPR027417 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1089 | 1340 | 1.41E-20 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2555 | 2789 | 1.9E-39 | IPR011990 |
| Gene3D | G3DSA:1.10.220.100 | - | 2173 | 2233 | 2.1E-14 | IPR044938 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2435 | 2539 | 1.1E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2291 | 2430 | 3.8E-26 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 1066 | 1355 | 6.3E-24 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 676 | 844 | 4.0E-64 | IPR027417 |
| SMART | SM00320 | WD40_4 | 1111 | 1151 | 1.1E-5 | IPR001680 |
| SMART | SM00175 | rab_sub_5 | 677 | 832 | 2.9E-95 | - |
| SMART | SM00173 | ras_sub_4 | 678 | 832 | 1.7E-31 | - |
| SMART | SM00176 | ran_sub_2 | 677 | 886 | 2.4E-4 | - |
| SMART | SM00320 | WD40_4 | 1232 | 1269 | 0.15 | IPR001680 |
| SMART | SM00174 | rho_sub_3 | 676 | 832 | 7.4E-11 | IPR001806 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 678 | 822 | 2.7E-28 | IPR005225 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2555 | 2583 | 9.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2482 | 2514 | 4.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2583 | 2616 | 5.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2381 | 2414 | 5.3E-6 | IPR002885 |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 634 | 830 | 9.412298 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2515 | 2549 | 8.845827 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2379 | 2413 | 13.011121 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2480 | 2514 | 11.498462 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2581 | 2615 | 11.805378 | IPR002885 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 663 | 914 | 32.185482 | - |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 662 | 992 | 17.381615 | IPR001806 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1236 | 1269 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1118 | 1160 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1118 | 1155 | 9.388329 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 692 | 708 | 1.3E-27 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 807 | 829 | 1.3E-27 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 669 | 690 | 1.3E-27 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 772 | 785 | 1.3E-27 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 710 | 732 | 1.3E-27 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 982 | - | - |
| Coils | Coil | Coil | 1782 | 1802 | - | - |
| Coils | Coil | Coil | 1839 | 1859 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13300.1 | Transducin/WD40 repeat-like superfamily protein. Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | 0 |
| RefSeq | XP_042940833.1 | enhancer of mRNA-decapping protein 4-like [Carya illinoinensis] | 0 |
| Q9LTT8 | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QAB5 | Enhancer of mRNA-decapping protein 4-like OS=Carpinus fangiana OX=176857 GN=FH972_000007 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20217, jg24642 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7098 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009135 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g091120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18599, Sbi_jg37024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4871 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017262, GOSA_00017263 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23632, Sgl28833 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011001, gene:ENSEOMG00000030169 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000180, CQ.Regalona.r1.4BG0026690 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30066310, pistato.v30151180, pistato.v30151450 |
| Apiaceae | Apium graveolens | 2 | Ag2G02308, Ag3G02426 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G013150, COCNU_11G006200 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695987, gene-LOC103696209, gene-LOC120111829 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.484.V1.1, AsparagusV1_05.2169.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G07956, Ftri15G07998, Ftri7G09129 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G13290.1, AT3G13300.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019901m.g.v1.0, Thhalv10019903m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g11490.v2.2, Sp3g11500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g051920.2N, BniB01g059160.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1552, Ceq02G1433 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1714, Cgl02G1477 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0061s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g20720, gene.Thate04g27310, gene.Thate08g11560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5478 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.2099, evm.TU.LG12.1301, evm.TU.LG12.1303 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037982 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37320, Lb2G11789 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.1226, AH07.3276, BH06.1277, BH07.3095, CH06.1410 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0143850, gene-QOZ80_2BG0199260 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0610930.1, HORVU.MOREX.r3.7HG0674380.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G020230, Oco04G020930, Oco11G007830, Oco12G007840 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g49090.1, LOC_Os06g19660.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G258900, gene-BS78_10G126000, gene-BS78_K043000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203578, Pt_Chr0404397 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G003400, Chr09G021350, Chr10G001330, Chr11G017420 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G522200, Tel7E01G400300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG043700, gene_TRIDC6BG051300 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G286100.3, TraesCS6B02G314800.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb189120_P001, Zm00001eb253140_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-21986, nbis-gene-45616, nbis-gene-8875 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14306, Zma_g17051, Zma_g31778 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.272, evm.TU.LG02.661, evm.TU.LG04.481 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1417, evm.TU.Scaffold_8_RagTag.360 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20075, nbisL1-mrna-20216 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13554, nbisL1-mrna-2818 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13364, nbisL1-mrna-13365, nbisL1-mrna-17964 |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000002l.239, evm.TU.utg000018l.762 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011642 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9063 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12103 |
| Salicaceae | Populus euphratica | 8 | populus_peu00036, populus_peu10494, populus_peu17074 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617622, gene-LOC132627692 |
| Solanaceae | Solanum chilense | 2 | SOLCI005594100, SOLCI006743000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002190, gene-LOC107025807 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24580_chr08_-, gene_17897 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2540, TC06G0575 |
| Zosteraceae | Zostera marina | 1 | Zosma01g39580.v3.1 |